eCheck deposits in gross

[TroyW]

Currently, eCheck deposits to the merchant have the fees taken out.  This makes it much more difficult to reconcile on the accounting side.  Anything that adds to the daily/monthly grind is something I want to avoid.  I'm considering leaving Authorize.Net for this one reason.  What would it take to have eCheck deposits be the full amount of revenue received, and take out the fees as a separate transaction?